Browse of TCMCG016C21211 protein

CDS

Accession Number	TCMCG016C21211
gbkey	CDS
Protein Id	OMO63119.1
Location	complement(join(14098..14688,15430..16231,18437..18577,19087..19340,19425..19623,20646..20848,21220..21428,22531..22675,22767..22993,23036..23150,23309..23527,23665..23812,23977..24065,24941..25204,25675..25859,28616..28781,29608..29778,29886..30158,31275..31574,31669..31828,32164..32333,33928..34090,34188..34243,34384..34470,34678..34770,35311..35436,35893..36051,36220..36297,37148..37207,37385..37458,37581..37620,39047..39169,39767..39847))
Organism	Corchorus capsularis
locus_tag	CCACVL1_22472

Protein

Length	2056aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source	AWWV01013016.1
Definition	RNA polymerase, alpha subunit [Corchorus capsularis]
Locus_tag	CCACVL1_22472

EGGNOG-MAPPER Annotation

COG_category	K
Description	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
KEGG_TC	-
KEGG_Module	M00182        [VIEW IN KEGG]
KEGG_Reaction	R00435        [VIEW IN KEGG] R00441        [VIEW IN KEGG] R00442        [VIEW IN KEGG] R00443        [VIEW IN KEGG]
KEGG_rclass	RC02795        [VIEW IN KEGG]
BRITE	br01611        [VIEW IN KEGG] ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko00002        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K02999        [VIEW IN KEGG]
EC	2.7.7.6        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway	ko00230        [VIEW IN KEGG] ko00240        [VIEW IN KEGG] ko01100        [VIEW IN KEGG] ko03020        [VIEW IN KEGG] map00230        [VIEW IN KEGG] map00240        [VIEW IN KEGG] map01100        [VIEW IN KEGG] map03020        [VIEW IN KEGG]
GOs	GO:0000428        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0005736        [VIEW IN EMBL-EBI] GO:0005911        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006351        [VIEW IN EMBL-EBI] GO:0006360        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009058        [VIEW IN EMBL-EBI] GO:0009059        [VIEW IN EMBL-EBI] GO:0009506        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010467        [VIEW IN EMBL-EBI] GO:0016070        [VIEW IN EMBL-EBI] GO:0018130        [VIEW IN EMBL-EBI] GO:0019438        [VIEW IN EMBL-EBI] GO:0030054        [VIEW IN EMBL-EBI] GO:0030880        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0032774        [VIEW IN EMBL-EBI] GO:0032991        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0034645        [VIEW IN EMBL-EBI] GO:0034654        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044249        [VIEW IN EMBL-EBI] GO:0044260        [VIEW IN EMBL-EBI] GO:0044271        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044452        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0055029        [VIEW IN EMBL-EBI] GO:0055044        [VIEW IN EMBL-EBI] GO:0061695        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:0097659        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1901362        [VIEW IN EMBL-EBI] GO:1901576        [VIEW IN EMBL-EBI] GO:1902494        [VIEW IN EMBL-EBI] GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGCGATTGCAGCGGCAGCTGTCATCGTCCCATTGGGCCTTCTCTTCTTCATCTCCGGCCTCGTTGTTAATCTCATTCAGGCAGTTTGCTTTGTTCTCATTCGGCCAGTGTCCAAGAGCACATACAGAAAGATCAATAGGGTGGTCGCAGAGTTGTTGTGGCTGGAACTCGTATGGCTTGTTGATTGGTGGGCGGGTGTTAAGATTAAAGTTTTCATAGATAATGAAAGCTTCAAGTTAATGGGTAAAGAACATGCTCTTGTCGTGGCCAATCACAGAAGTGATATTGATTGGTTAGTTGGATGGGTTTTGGCTCAGCGATCGGGTTGTCTTGGCAGTACATTGGCTGTTATGAAGAAATCATCGAAATTCCTTCCGGTTATAGGTTGGTCAATGTGGTTTTCTGAGTACCTATTTTTAGAACGAAGCTGGGCCAAGGATGAAAATACTTTAAAGGCAGGTCTTCAACGTTTAAAGGACTTCCCACGCCCTTTTTGGTTGGCACTTTTTGTAGAAGGAACTCGCTTTACTCAAGCAAAACTTCTAGCAGCCCAAGAATATGCTACCTCACAAGGATTGCCTATACCTAGAAATGTTTTAATTCCGCGTACAAAGGGTTTTGTTTCAGCTGTAAGTCATATGCGGTCATTTGTCCCAGCTATTTATGATATGACGGTGGCTATTCCAAAAAGCTCACCTTCACCTACAATGCTTAGACTTTTCAAGGGGCAATCATCCGTGGTGCATGTACACATCAAGCGGCGTCTCATGAAGGATCTTCCTGAAGCAGATGAGGCTGTTGCTCAATGGTGTAAAGATATGTTTGTGGAGAAGGACAAGTTGTTGGACAAACATATTGCTGAGGACACTTTCAGTGACCAACCATTGCAAAATATTGGCCGACCGATTAAGTCTCTTTTGGTTTTTACCTCTTGGGCATGTCTTGTGGTTTATGGGGCTCTCAAATTTCTGCAATGGCGGAGCGTTCGACTCCTGCCAAGGTTGCACCAGGTAAGCCCAAGAATGACGGTAATTCTTCAGAGGCAAGAGGAGACAAACAGCAATAGATCATCAGAACTTCCTTTCAAGATATCCATACAACAGGAACCTTATCCGCAGCGATACATTCATAAACCTAAAGGAGCCACGGATTCAGTTGAGGCGATATGGTTCAATTTCATGACGACGGAAGAGGTTCGAAAACACAGCGTTTTGAAAGTAACAAACGCCAATTTGCTTGACCTCATGGAGCGCCCTATGCCTGGCGGATTATATGACCCTGCTTTAGGGCCTCTTGAGGATCGAGTGCCTTGTAAAAGCTGTGGTGCCTTGAAATTACACTGCCCCGGTCATTGTGGTCACATTGACCTCGTGTCTCCCATTTATAATCCCTTGCTGTTCAATTTTCTTAATATGCTTCTTCAAAGGACTTGTTTCTTTTGTTATCATTTTAGGGCAGAAAGGACTGAGGTTGAGAGATGTGTTTCTAAATTGAAACTCATTGGAAAAGGTGATATTGTTGGTGCCAAAATGTTAGATTCAGACTCCACAGATGCATCATCATATCCAGAGTATGGTGAAGGCAGCCAAGAATTAGGTTCTACAGTACACGATTCTGAGACTATAAACCCGAAGGAGTGGACGTCTCTTCAGCTTAGAGAAGCAATTTCAGTTTTAAATAACTTTCTAAAACAGAAATACAAGAAGTGTAAGAACTGTGATGCGAAAAATCCTACTATCGAGAAACCCATTTTCGGTTGGTTATACACGCGTGGCATGTCGGGTGCTCAAATGAGGGAGAATGTTATCAGAGGGTGCACAATGGTAGACACATTTTCTGGTGAAGCTGGATCTGGGTTAGAAGATGCTAATGATGCTGTGGTTAGCTCTGGAAGTGTTGATACAGATGAAATGGATACTACTGAAACTGGCTCCGCTGCAGCTGAACACAGTGGCCCAAAAGCTCGTAAGAAGAAGGCGCAAATCCCTCTTGAGTTCATGAAGCAGAAAAATTTGTTTTCAGGACCTCTGTTGCCATCAGAGGTTAAAAAAATAACAAAACTTTTGTGGGAAAATGAGGTTGAACTTTGCTCGTTGATCACTGATATCCAGCAGCAAGGATTTGGAAGGAAAGAAGGTTACTCTATGTTATTCTTAGAAACCATTCTTGTACCTCCTATTAAGTTCCGTGCTCCAACCAAGGGTGGCGATTCTGTGATGGAACATCCTCAGACGGTTTTGCTAAATAAGGTGTTGCAGGCCAATATATCACTAGGAAATGCTTATACTAACGAATTGAAGAGTTCAAAGGTTGTAGTTAGACTGTGGATGGATCTCCAGCAATCTGTAAATTTGTTGTTTGATAACAAAAATGCAACAGGTCGGAGAGATCAGAGTTCAGGAATATGTCAGTTGCTGGAAAAGAAGGAAGGCATGTTCCGCCAGAAAATGATGGGGAAAAGGGTTAATTTTGCTTGTCGATCTGTTATATCTCCAGATCCTTATTTAGCTGTTAATGAGATTGGAATTCCACCGAACTTTGCATTGACGTTAACTTATCCAGAGAGAGTGACTCCTTGGAATACTGCAAAGTTGAGGGAAGCTATTGTAAATGGCCCTCAAATTCATCCAGGGGCTACACACTATATTGATAAGTTGTCCACTCAAAAGCTGCCACCAGACCGAAAAGCACGTATTACCTTCGCAAGAAAATTACCTTCGTCAAGGGGTGCTATCACCCAGCCTGGAAATAATTTTGACTATGAATTTGAAGGAAAAACTGTTCTCCGGCACTTACGAGATGGAGATGTTGTGCTTGTCAATCGACAGCCTACACTTCACAAGCCAAGTATAATGGCGCATATAGTTCGTGTTTTGCCAAAAGAGAAGACAATTCGTATGCATTATGCAAATTGCAGTACGTACAATGCTGATTTTGACGGTGATGAAATAAATGTACATTTCCCACAAGATGAAATTTCTCGTGCTGAAGCATACAATATTGTTAATGCAAATAACCAATATGTCAGGCCTTCGAATGGTGAACCACTCAGAGCCTTAATTCAGGATAATATTGTAAGTTCTGTACTTCTCACGAAGAGGGACACTTTCTTAAGCACCGATGAGTTTAACCAGCTTTTGTATAGCTCTGGTGTTTCTAGTTTATCCCAATGTTCTTTCTCCAGTAAACCTGGCCAGAAAGTATCTATATCAAGTTCTGAAGAAGGGATGCTGTCCACTCATCCTGCAATATTGAAACCTGTACCTCTTTGGACGGGGAAGCAGGTCATCACTGCTGTGTTAAATCATATTACAAGGAACTGCCCACCATTCACTATGGAAAAAACTGGTAAAATACCACATGATTTTTTTAGAAACAGATCAACTGAAAATAAACCAAAAAAAACGAAGAATAGCAAAAAGAAAGCACCAGATGAAGAGAAAATGGAGAGGGAACCAGATGAAGAGAAAATATTGATACATAAAAATGACTTCTTGCGTGGTGTGATTGATAAGGCTCAGTTTGCTGACTATGGTCTGGTTCATACAGTTCAGGAGCTCTATGGCTCAAACGCTGCAGGCATTTTGCTGTCGGTGTTTAGTCGTCTCTTTACAGTTTTCTTGCAGATGCATGGTTTCACATGTGGAGTAGATGACCTTTTGATAATGAAAGGTAAAGACATTGAAAGGAAGAAGCAACTTGAAGATTGTGAGAAGAAAGTCACGGAAGCACATTATGAGCTTTTTGGAGTTGAGGTAGATACTGAAAAAGCTCCAACAGAATTGCAATTAAAAATTGAGAGAAACATACGCAGAGATGGGGAGAATGCACTGACAGCTTTGGACAGAAAGATGATTAGTGTGCTTAATGAGAACTCGAGCAGAGGTGTTCTTGCTGGACTGTTGTCTGAGGGTTTAGTAAAATCTATGGGAAAAAACTGTATAGCTATTATGACTACATCTGGGGCCAAAGGTAGCAAGGTGAACTTTCAGCAAATTTCATCTTACCTGGGTCAACAAGAATTGGAAGGGAAACGAGTACCTCGAATGGTTTCTGGTAAAACTTTACCCTGTTTCCATCCATGGGATTGGGCAGCTAGAGCTGGTGGTTTCATTAGTGACCGGTTTCTTAGTGGTCTTCGGCCACAAGAATATTATTTCCATTGTATGGCTGGACGTGAAGGTTTAGTTGATACAGCCGTCAAAACTTCACGCAGTGGATACCTGCAGAGATGCCTTATAAAGAATCTGGAGTGTTTGAAAATTAGTTATGATCATACAGTTCGTGATGCTGATGGCTCCATCGTTCAATTTAACTATGGGGAAGATGGTATTGATGTCCATCAGATCAGTTTCATTGCGAAATTTGAAGCACTGGCATTAAATCAAGATATGATGTCAGAAAAGTTTGGTTCTCAGCTTGAAGAGCCTGACTCTCATATAAAATTGCCTAAAGGTCTTAAGCAAGAAGCTGTGGACTTTATTAAGAAATTAGGAGGAAAACAGCAACAGAAAATAAAACAAAAAGATTTCTTAAAGTTATTGAATCGAAAATTTCTTTCAAGTCTTGCCCAGCCTGGAGAACCAGTTGGTGTGCTTGCTGCCCAATCTGTTGGAGAACCTTCAACACAGATGACGCTGAATACTTTCCATCTTGCGGGGCGAGGTGAAATGAATGTTACGCTTGGTATTCCACGTTTACAGGAGATCGTAATGACTGCTTCAGCCGATATCAGGACTCCAGTAATGACATGCCCCTTGCGCAAGGGGAAAACAAAGGAGGAAGCCTTTTGTCTTGCTGATAAGATGAAGAGAATTACAGTAGCAGACATATTAGAGAGTATGAAAGTATCTGTCACTCCATTTGCTGTTCACAACGGTGATATTTGCAGTATCTATAAACTTAAAATGAGGCTTGGCAAACCTGGCCAGTATTTTAGGAACAGTGATATAACAGTTGAAGACTGTGAGCACATCTTAAAGTTTGTCTTTTTGAGGGACTTAGAGGATGCTATTCACAACCATCTGGTTTTGCTCTCCAGAATTAGTGGCATAAAAAATTTTATTGCGGATTCACGAAAAAGTGCTAATGAGGCAGAAGAAGATATTCCTGAAAACAGATCACATGGGAATGAGAATGATGATGATGATGATGATGATCATGAGGAAGCAGGTGAGGATCTTGGTCTAGATGCACAAAAGCGAAAATTGCAAACTATAGATGAGGTAGACTATGAAGATGGTTCGGAAGAAGAAAATGGCGGGGCATCATCGGCTGGGTTCTTAAGTGAAATTGATATGTCTGAGGATGAGGATGAGGATGAGAATGAGAATGGAACTATTGAAGATAAGGTGATTGGATCAGATCATGGCAAGGACGAGATTAGTCTAAATTCACCAAACATAGAAAAAAGATCCAAGTCAAGGGAGGATGAGACCAAATCAGAACCCAAAAGAAAAAAGAAGAGAGCAAAGTTTGCTAGGAAGGAGACTGATAGAGCAATATTTGATGATGTTAGAGGATTGCACTTTGAGGTCCATTTTAAGTTGATAGACGAACCTCGCATTTTACTGGCTCAGATTGCTGAGAAGACAGCGAAGAAGGTTTATATTCAGAGCTTTGGAAAGATTGATCAATGTCGAGTGACTGACTGTAGTGAGAATCAAGTGTTTTACTATGGTGAAAATCCCAAAGAAAGGAAGAAAATAGAGAAGAAGAATGAAATACCAGCACTGCACACGACTGGAGTGGACTTTGGTGCTCTTTGGCAGATGGATGATTCCCTTGATGTTAGGTATTTATATTCCAATAGCATCCATGCAATGCTTAATACATATGGAGTGGAAGCTGCCAGAGAAACCATCATTAGGGAGATCAGTCATGTTTTCTCGTCATATTCGATAGCTGTCAATATCCGCCACTTAACACTTATTGCTGATTTTATGACCCAATCTGGACGGTATAGACCAATGAGTCGCCTTGGTGGTATAGCAGATTCAATATCACCTTTAAGCAAAATGTCTTTTGAGATTGCCTCTAAATTCATTGTTGAAGCTGCAAAACATGGGCTGGTTGACAACATGGAAGCACCATCCGCTAGAATCTGCCTCGGTTTGCCAGTGAAAATGGGCACTGGATCCTTTGATTTGTTGCATAAGGTAGATATTTGA

Protein:   MAIAAAAVIVPLGLLFFISGLVVNLIQAVCFVLIRPVSKSTYRKINRVVAELLWLELVWLVDWWAGVKIKVFIDNESFKLMGKEHALVVANHRSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDENTLKAGLQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYATSQGLPIPRNVLIPRTKGFVSAVSHMRSFVPAIYDMTVAIPKSSPSPTMLRLFKGQSSVVHVHIKRRLMKDLPEADEAVAQWCKDMFVEKDKLLDKHIAEDTFSDQPLQNIGRPIKSLLVFTSWACLVVYGALKFLQWRSVRLLPRLHQVSPRMTVILQRQEETNSNRSSELPFKISIQQEPYPQRYIHKPKGATDSVEAIWFNFMTTEEVRKHSVLKVTNANLLDLMERPMPGGLYDPALGPLEDRVPCKSCGALKLHCPGHCGHIDLVSPIYNPLLFNFLNMLLQRTCFFCYHFRAERTEVERCVSKLKLIGKGDIVGAKMLDSDSTDASSYPEYGEGSQELGSTVHDSETINPKEWTSLQLREAISVLNNFLKQKYKKCKNCDAKNPTIEKPIFGWLYTRGMSGAQMRENVIRGCTMVDTFSGEAGSGLEDANDAVVSSGSVDTDEMDTTETGSAAAEHSGPKARKKKAQIPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSLITDIQQQGFGRKEGYSMLFLETILVPPIKFRAPTKGGDSVMEHPQTVLLNKVLQANISLGNAYTNELKSSKVVVRLWMDLQQSVNLLFDNKNATGRRDQSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPNFALTLTYPERVTPWNTAKLREAIVNGPQIHPGATHYIDKLSTQKLPPDRKARITFARKLPSSRGAITQPGNNFDYEFEGKTVLRHLRDGDVVLVNRQPTLHKPSIMAHIVRVLPKEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPLRALIQDNIVSSVLLTKRDTFLSTDEFNQLLYSSGVSSLSQCSFSSKPGQKVSISSSEEGMLSTHPAILKPVPLWTGKQVITAVLNHITRNCPPFTMEKTGKIPHDFFRNRSTENKPKKTKNSKKKAPDEEKMEREPDEEKILIHKNDFLRGVIDKAQFADYGLVHTVQELYGSNAAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMKGKDIERKKQLEDCEKKVTEAHYELFGVEVDTEKAPTELQLKIERNIRRDGENALTALDRKMISVLNENSSRGVLAGLLSEGLVKSMGKNCIAIMTTSGAKGSKVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFNYGEDGIDVHQISFIAKFEALALNQDMMSEKFGSQLEEPDSHIKLPKGLKQEAVDFIKKLGGKQQQKIKQKDFLKLLNRKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIVMTASADIRTPVMTCPLRKGKTKEEAFCLADKMKRITVADILESMKVSVTPFAVHNGDICSIYKLKMRLGKPGQYFRNSDITVEDCEHILKFVFLRDLEDAIHNHLVLLSRISGIKNFIADSRKSANEAEEDIPENRSHGNENDDDDDDDHEEAGEDLGLDAQKRKLQTIDEVDYEDGSEEENGGASSAGFLSEIDMSEDEDEDENENGTIEDKVIGSDHGKDEISLNSPNIEKRSKSREDETKSEPKRKKKRAKFARKETDRAIFDDVRGLHFEVHFKLIDEPRILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGENPKERKKIEKKNEIPALHTTGVDFGALWQMDDSLDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFSSYSIAVNIRHLTLIADFMTQSGRYRPMSRLGGIADSISPLSKMSFEIASKFIVEAAKHGLVDNMEAPSARICLGLPVKMGTGSFDLLHKVDI